|Using Fluidity on the HPC|
Fluidity is installed in /opt/fluidity. To use it, you have to source one of the following files, depending on your login shell:
Fluidity is compiled with mpi support. For example, to run it on 4 nodes, you can use the following submit script
#!/bin/sh #MOAB -l nodes=4 #MOAB -n fluidity source /usr/local/profile.d/fluidity.sh mpiexec dfluidity -v2 -l -x optionfile
Because mpi support was compiled in, you will get a warning if you start fluidity as a single processor job on a login node (missing uverbs verions and a missing infiniband network card). You can ignore this. However, don't run multiple-cpu jobs on the login nodes.