PHYLIP: Phylogenetic Inference Package - Upload necessary files onto the HPC
Article Index
PHYLIP: Phylogenetic Inference Package
1. Upload necessary files onto the HPC
2. Create Submission Script
3. Submit the job to run on the HPC
4. Monitoring the job
5. Collect the output
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1. Upload necessary files onto the HPC

More information on file management, connecting to the hpc and ssh can be found here.

First create a directory called phylip inside your home directory. Upload your infile to that directory. For this example I will use an example file from the PHYLIP documentation.

5   13
Alpha AACGTGGCCAAAT
Beta AAGGTCGCCAAAC
Gamma CATTTCGTCACAA
Delta GGTATTTCGGCCT
Epsilon GGGATCTCGGCCC

After the uploads your should have one file inside your phylip directory.

phylip/infile